IL_6WYV_033

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUCA*UGC

Length

7 nucleotides

Bulged bases

6WYV|1|I|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_033 not in the Motif Atlas

Geometric match to IL_4V88_467

Geometric discrepancy: 0.2159

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6WYV|1|I|G|1011
6WYV|1|I|U|1012
6WYV|1|I|C|1013
6WYV|1|I|A|1014
*
6WYV|1|I|U|1148
6WYV|1|I|G|1149
6WYV|1|I|C|1150

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13