IL_6WYV_034

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_034 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0929

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6WYV|1|I|U|1018
6WYV|1|I|U|1019
6WYV|1|I|A|1020
6WYV|1|I|A|1021
6WYV|1|I|G|1022
6WYV|1|I|U|1023
6WYV|1|I|G|1024
*
6WYV|1|I|C|1140
6WYV|1|I|U|1141
6WYV|1|I|A|1142
6WYV|1|I|A|1143
6WYV|1|I|A|1144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13