IL_6WYV_072

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6WYV|1|I|A|1938, 6WYV|1|I|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_072 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1557

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6WYV|1|I|C|1934
6WYV|1|I|G|1935
6WYV|1|I|A|1936
6WYV|1|I|A|1937
6WYV|1|I|A|1938
6WYV|1|I|5MU|1939
6WYV|1|I|U|1940
6WYV|1|I|C|1941
6WYV|1|I|C|1942
6WYV|1|I|U|1943
6WYV|1|I|U|1944
6WYV|1|I|G|1945
*
6WYV|1|I|C|1961
6WYV|1|I|5MC|1962
6WYV|1|I|U|1963
6WYV|1|I|G|1964

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2