IL_6WYV_102

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_102 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1232

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|U|2847
6WYV|1|I|G|2848
6WYV|1|I|U|2849
6WYV|1|I|A|2850
6WYV|1|I|A|2851
6WYV|1|I|G|2852
*
6WYV|1|I|U|2865
6WYV|1|I|U|2866
6WYV|1|I|G|2867
6WYV|1|I|A|2868
6WYV|1|I|G|2869

Current chains

Chain I

23S ribosomal RNA

Nearby chains