IL_6WYV_111

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_111 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0683

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6WYV|1|I|G|1666
6WYV|1|I|G|1667
6WYV|1|I|A|1668
6WYV|1|I|A|1669
6WYV|1|I|C|1670
6WYV|1|I|U|1671
6WYV|1|I|A|1672
6WYV|1|I|G|1673
6WYV|1|I|G|1674
*
6WYV|1|I|C|1990
6WYV|1|I|U|1991
6WYV|1|I|G|1992
6WYV|1|I|U|1993
6WYV|1|I|C|1994

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3