IL_6WYV_113

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GU(G7M)*CC

Length

5 nucleotides

Bulged bases

6WYV|1|I|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_113 not in the Motif Atlas

Homologous match to IL_5J7L_388

Geometric discrepancy: 0.1221

The information below is about IL_5J7L_388

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6WYV|1|I|G|2067
6WYV|1|I|U|2068
6WYV|1|I|G7M|2069
*
6WYV|1|I|C|2442
6WYV|1|I|C|2443

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

VIRGINIAMYCIN S1

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4