IL_6WZR_003

3D structure

PDB id

6WZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusibacterium ulcerans ZTP riboswitch bound to p-1-pyridinyl AICA

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WZR_003 not in the Motif Atlas

Homologous match to IL_6WZR_001

Geometric discrepancy: 0.0571

The information below is about IL_6WZR_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6WZR|1|B|U|12
6WZR|1|B|G|13
6WZR|1|B|A|14
6WZR|1|B|C|15
*
6WZR|1|B|G|41
6WZR|1|B|A|42
6WZR|1|B|A|43
6WZR|1|B|G|44

Current chains

Chain B

Fusibacterium ulcerans ZTP riboswitch

Nearby chains