IL_6X5M_003

3D structure

PDB id

6X5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUUUUC*GUUUUUAUC

Length

16 nucleotides

Bulged bases

6X5M|1|r|A|31, 6X5M|1|r|U|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31915.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6X5M|1|r|G|3
6X5M|1|r|U|4
6X5M|1|r|U|5
6X5M|1|r|U|6
6X5M|1|r|U|7
6X5M|1|r|U|8
6X5M|1|r|C|9
*
6X5M|1|r|G|25
6X5M|1|r|U|26
6X5M|1|r|U|27
6X5M|1|r|U|28
6X5M|1|r|U|29
6X5M|1|r|U|30
6X5M|1|r|A|31
6X5M|1|r|U|32
6X5M|1|r|C|33

Current chains

Chain r

ggPAN RNA (39-MER)

Nearby chains

Chain a

ggcA9 RNA (12-MER)