IL_6X6T_145
3D structure
- PDB id
- 6X6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAUCCUUG*CUG
- Length
- 14 nucleotides
- Bulged bases
- 6X6T|1|a|A|1938, 6X6T|1|a|U|1944
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6X6T_145 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.072
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
6X6T|1|a|C|1934
6X6T|1|a|G|1935
6X6T|1|a|A|1936
6X6T|1|a|A|1937
6X6T|1|a|A|1938
6X6T|1|a|U|1940
6X6T|1|a|C|1941
6X6T|1|a|C|1942
6X6T|1|a|U|1943
6X6T|1|a|U|1944
6X6T|1|a|G|1945
*
6X6T|1|a|C|1961
6X6T|1|a|U|1963
6X6T|1|a|G|1964
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain h
- 50S ribosomal protein L2
Coloring options: