IL_6X9Q_003

3D structure

PDB id

6X9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

6X9Q|1|D|C|48, 6X9Q|1|D|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6X9Q_003 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.0657

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6X9Q|1|D|C|47
6X9Q|1|D|C|48
6X9Q|1|D|U|49
6X9Q|1|D|A|50
6X9Q|1|D|A|51
6X9Q|1|D|C|52
*
6X9Q|1|D|G|359
6X9Q|1|D|G|360
6X9Q|1|D|G|361

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12