3D structure

PDB id
6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
6X9Q|1|D|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6X9Q_022 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.0651
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6X9Q|1|D|G|446
6X9Q|1|D|G|447
6X9Q|1|D|A|448
6X9Q|1|D|G|449
6X9Q|1|D|G|450
*
6X9Q|1|D|C|483
6X9Q|1|D|G|484
6X9Q|1|D|U|485
6X9Q|1|D|U|486
6X9Q|1|D|A|487
6X9Q|1|D|C|488

Current chains

Chain D
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S4
Chain U
30S ribosomal protein S16

Coloring options:


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