3D structure

PDB id
6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GAAG*UGUGCCUUCGGGAAC
Length
19 nucleotides
Bulged bases
6X9Q|1|D|U|1025, 6X9Q|1|D|U|1030, 6X9Q|1|D|G|1032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6X9Q|1|D|G|1003
6X9Q|1|D|A|1004
6X9Q|1|D|A|1005
6X9Q|1|D|G|1006
*
6X9Q|1|D|U|1023
6X9Q|1|D|G|1024
6X9Q|1|D|U|1025
6X9Q|1|D|G|1026
6X9Q|1|D|C|1027
6X9Q|1|D|C|1028
6X9Q|1|D|U|1029
6X9Q|1|D|U|1030
6X9Q|1|D|C|1031
6X9Q|1|D|G|1032
6X9Q|1|D|G|1033
6X9Q|1|D|G|1034
6X9Q|1|D|A|1035
6X9Q|1|D|A|1036
6X9Q|1|D|C|1037

Current chains

Chain D
16S rRNA

Nearby chains

Chain S
30S ribosomal protein S14

Coloring options:

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