3D structure

PDB id
6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
6X9Q|1|D|U|1159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6X9Q_054 not in the Motif Atlas
Geometric match to IL_5J7L_053
Geometric discrepancy: 0.1237
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6X9Q|1|D|C|1158
6X9Q|1|D|U|1159
6X9Q|1|D|G|1160
6X9Q|1|D|C|1161
*
6X9Q|1|D|G|1175
6X9Q|1|D|A|1176
6X9Q|1|D|G|1177
6X9Q|1|D|G|1178
6X9Q|1|D|A|1179
6X9Q|1|D|A|1180
6X9Q|1|D|G|1181

Current chains

Chain D
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain O
30S ribosomal protein S9

Coloring options:


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