IL_6X9Q_060

3D structure

PDB id

6X9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCCG*CGAAC

Length

9 nucleotides

Bulged bases

6X9Q|1|D|C|1403

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6X9Q|1|D|G|1401
6X9Q|1|D|C|1403
6X9Q|1|D|C|1404
6X9Q|1|D|G|1405
*
6X9Q|1|D|C|1496
6X9Q|1|D|G|1497
6X9Q|1|D|A|1499
6X9Q|1|D|A|1500
6X9Q|1|D|C|1501

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 27 nt long spacer

Chain B

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA