IL_6X9Q_151

3D structure

PDB id

6X9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6X9Q|1|a|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6X9Q_151 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0795

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6X9Q|1|a|U|2081
6X9Q|1|a|A|2082
6X9Q|1|a|G|2083
*
6X9Q|1|a|U|2236
6X9Q|1|a|G|2237
6X9Q|1|a|G|2238
6X9Q|1|a|G|2239

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain h

50S ribosomal protein L2