IL_6XDQ_053

3D structure

PDB id

6XDQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDQ_053 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.1321

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6XDQ|1|D|C|1129
6XDQ|1|D|A|1130
6XDQ|1|D|G|1131
6XDQ|1|D|C|1132
*
6XDQ|1|D|G|1142
6XDQ|1|D|G|1143

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S9