IL_6XDQ_072
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XDQ_072 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0461
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6XDQ|1|a|G|188
6XDQ|1|a|G|189
6XDQ|1|a|A|190
6XDQ|1|a|A|191
6XDQ|1|a|C|192
6XDQ|1|a|U|193
6XDQ|1|a|G|194
*
6XDQ|1|a|C|201
6XDQ|1|a|U|202
6XDQ|1|a|A|203
6XDQ|1|a|A|204
6XDQ|1|a|G|205
6XDQ|1|a|U|206
6XDQ|1|a|A|207
6XDQ|1|a|C|208
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L28
- Chain m
- 50S ribosomal protein L34
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
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