IL_6XDQ_077
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 6XDQ|1|a|A|504, 6XDQ|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XDQ_077 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.0632
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6XDQ|1|a|G|481
6XDQ|1|a|A|482
6XDQ|1|a|A|483
6XDQ|1|a|C|484
*
6XDQ|1|a|G|496
6XDQ|1|a|A|497
6XDQ|1|a|G|498
6XDQ|1|a|U|499
6XDQ|1|a|G|500
6XDQ|1|a|A|501
6XDQ|1|a|A|502
6XDQ|1|a|A|503
6XDQ|1|a|A|504
6XDQ|1|a|A|505
6XDQ|1|a|G|506
6XDQ|1|a|A|507
6XDQ|1|a|A|508
6XDQ|1|a|C|509
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain 3
- 50S ribosomal protein L24
Coloring options: