IL_6XDQ_104
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6XDQ|1|a|A|1127, 6XDQ|1|a|U|1130
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XDQ_104 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.065
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6XDQ|1|a|G|1024
6XDQ|1|a|G|1025
6XDQ|1|a|G|1026
6XDQ|1|a|A|1027
6XDQ|1|a|A|1028
6XDQ|1|a|A|1029
6XDQ|1|a|C|1030
*
6XDQ|1|a|G|1124
6XDQ|1|a|G|1125
6XDQ|1|a|A|1126
6XDQ|1|a|A|1127
6XDQ|1|a|G|1128
6XDQ|1|a|A|1129
6XDQ|1|a|U|1130
6XDQ|1|a|G|1131
6XDQ|1|a|U|1132
6XDQ|1|a|A|1133
6XDQ|1|a|A|1134
6XDQ|1|a|C|1135
6XDQ|1|a|G|1136
6XDQ|1|a|G|1137
6XDQ|1|a|G|1138
6XDQ|1|a|G|1139
6XDQ|1|a|C|1140
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain j
- 50S ribosomal protein L3
- Chain q
- 50S ribosomal protein L36
- Chain s
- 50S ribosomal protein L13
- Chain v
- 50S ribosomal protein L16
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