IL_6XDQ_195

3D structure

PDB id

6XDQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

6XDQ|1|a|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XDQ|1|a|C|1043
6XDQ|1|a|C|1044
6XDQ|1|a|C|1045
6XDQ|1|a|A|1046
6XDQ|1|a|G|1047
6XDQ|1|a|A|1048
6XDQ|1|a|C|1049
6XDQ|1|a|A|1050
6XDQ|1|a|G|1051
6XDQ|1|a|C|1052
6XDQ|1|a|C|1053
*
6XDQ|1|a|G|1106
6XDQ|1|a|G|1107
6XDQ|1|a|U|1108
6XDQ|1|a|C|1109
6XDQ|1|a|G|1110
6XDQ|1|a|A|1111
6XDQ|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36