IL_6XDR_039

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6XDR|1|D|A|1394

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_039 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.0636

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6XDR|1|D|G|922
6XDR|1|D|A|923
*
6XDR|1|D|U|1393
6XDR|1|D|A|1394
6XDR|1|D|C|1395

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 27 nt long spacer

Chain K

30S ribosomal protein S5