IL_6XDR_045
3D structure
- PDB id
- 6XDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAAG*UGUGCCUUCGGGAAC
- Length
- 19 nucleotides
- Bulged bases
- 6XDR|1|D|U|1025, 6XDR|1|D|U|1030, 6XDR|1|D|G|1032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XDR|1|D|G|1003
6XDR|1|D|A|1004
6XDR|1|D|A|1005
6XDR|1|D|G|1006
*
6XDR|1|D|U|1023
6XDR|1|D|G|1024
6XDR|1|D|U|1025
6XDR|1|D|G|1026
6XDR|1|D|C|1027
6XDR|1|D|C|1028
6XDR|1|D|U|1029
6XDR|1|D|U|1030
6XDR|1|D|C|1031
6XDR|1|D|G|1032
6XDR|1|D|G|1033
6XDR|1|D|G|1034
6XDR|1|D|A|1035
6XDR|1|D|A|1036
6XDR|1|D|C|1037
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain S
- 30S ribosomal protein S14
Coloring options: