3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
6XDR|1|a|A|504, 6XDR|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XDR_077 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0631
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

6XDR|1|a|G|481
6XDR|1|a|A|482
6XDR|1|a|A|483
6XDR|1|a|C|484
*
6XDR|1|a|G|496
6XDR|1|a|A|497
6XDR|1|a|G|498
6XDR|1|a|U|499
6XDR|1|a|G|500
6XDR|1|a|A|501
6XDR|1|a|A|502
6XDR|1|a|A|503
6XDR|1|a|A|504
6XDR|1|a|A|505
6XDR|1|a|G|506
6XDR|1|a|A|507
6XDR|1|a|A|508
6XDR|1|a|C|509

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain 3
50S ribosomal protein L24

Coloring options:


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