IL_6XDR_094

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

6XDR|1|a|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_094 not in the Motif Atlas

Geometric match to IL_5J7L_271

Geometric discrepancy: 0.0809

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6XDR|1|a|G|862
6XDR|1|a|A|863
*
6XDR|1|a|U|913
6XDR|1|a|G|914
6XDR|1|a|C|915

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain d

5S ribosomal RNA; 5S rRNA

Chain v

50S ribosomal protein L16