IL_6XDR_098

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

6XDR|1|a|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XDR|1|a|G|880
6XDR|1|a|G|881
6XDR|1|a|G|882
6XDR|1|a|G|883
*
6XDR|1|a|C|893
6XDR|1|a|U|894
6XDR|1|a|U|895
6XDR|1|a|A|896
6XDR|1|a|C|897

Current chains

Chain a

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L16