IL_6XDR_102

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6XDR|1|a|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_102 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.065

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6XDR|1|a|G|1011
6XDR|1|a|U|1012
6XDR|1|a|C|1013
*
6XDR|1|a|G|1149
6XDR|1|a|C|1150

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20