3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6XDR|1|a|A|1127, 6XDR|1|a|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XDR_104 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.065
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6XDR|1|a|G|1024
6XDR|1|a|G|1025
6XDR|1|a|G|1026
6XDR|1|a|A|1027
6XDR|1|a|A|1028
6XDR|1|a|A|1029
6XDR|1|a|C|1030
*
6XDR|1|a|G|1124
6XDR|1|a|G|1125
6XDR|1|a|A|1126
6XDR|1|a|A|1127
6XDR|1|a|G|1128
6XDR|1|a|A|1129
6XDR|1|a|U|1130
6XDR|1|a|G|1131
6XDR|1|a|U|1132
6XDR|1|a|A|1133
6XDR|1|a|A|1134
6XDR|1|a|C|1135
6XDR|1|a|G|1136
6XDR|1|a|G|1137
6XDR|1|a|G|1138
6XDR|1|a|G|1139
6XDR|1|a|C|1140

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
5S ribosomal RNA; 5S rRNA
Chain j
50S ribosomal protein L3
Chain q
50S ribosomal protein L36
Chain s
50S ribosomal protein L13
Chain v
50S ribosomal protein L16

Coloring options:


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