IL_6XDR_133

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6XDR|1|a|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_133 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.048

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6XDR|1|a|A|1669
6XDR|1|a|C|1670
6XDR|1|a|U|1671
6XDR|1|a|A|1672
6XDR|1|a|G|1673
6XDR|1|a|G|1674
*
6XDR|1|a|C|1990
6XDR|1|a|U|1991
6XDR|1|a|G|1992
6XDR|1|a|U|1993

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14