IL_6XDR_143

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_143 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1035

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6XDR|1|a|U|1864
6XDR|1|a|U|1865
6XDR|1|a|A|1866
6XDR|1|a|G|1867
*
6XDR|1|a|C|1874
6XDR|1|a|G|1875
6XDR|1|a|A|1876
6XDR|1|a|A|1877
6XDR|1|a|G|1878

Current chains

Chain a

23S rRNA

Nearby chains