IL_6XDR_145
3D structure
- PDB id
- 6XDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAAAUCCUUG*CUG
- Length
- 14 nucleotides
- Bulged bases
- 6XDR|1|a|A|1938, 6XDR|1|a|U|1944
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XDR_145 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.072
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
6XDR|1|a|C|1934
6XDR|1|a|G|1935
6XDR|1|a|A|1936
6XDR|1|a|A|1937
6XDR|1|a|A|1938
6XDR|1|a|U|1940
6XDR|1|a|C|1941
6XDR|1|a|C|1942
6XDR|1|a|U|1943
6XDR|1|a|U|1944
6XDR|1|a|G|1945
*
6XDR|1|a|C|1961
6XDR|1|a|U|1963
6XDR|1|a|G|1964
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain h
- 50S ribosomal protein L2
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