IL_6XDR_150

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

6XDR|1|a|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_150 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.0635

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6XDR|1|a|A|2070
6XDR|1|a|A|2071
*
6XDR|1|a|U|2438
6XDR|1|a|A|2439
6XDR|1|a|C|2440
6XDR|1|a|U|2441

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2