IL_6XDR_190

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGGGGAUAAC*GCUAAUACCGC

Length

21 nucleotides

Bulged bases

6XDR|1|D|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XDR|1|D|G|144
6XDR|1|D|G|145
6XDR|1|D|G|146
6XDR|1|D|G|147
6XDR|1|D|G|148
6XDR|1|D|A|149
6XDR|1|D|U|150
6XDR|1|D|A|151
6XDR|1|D|A|152
6XDR|1|D|C|153
*
6XDR|1|D|G|168
6XDR|1|D|C|169
6XDR|1|D|U|170
6XDR|1|D|A|171
6XDR|1|D|A|172
6XDR|1|D|U|173
6XDR|1|D|A|174
6XDR|1|D|C|175
6XDR|1|D|C|176
6XDR|1|D|G|177
6XDR|1|D|C|178

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20