IL_6XDR_199

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

6XDR|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XDR|1|a|G|2123
6XDR|1|a|G|2124
6XDR|1|a|G|2125
6XDR|1|a|A|2126
6XDR|1|a|G|2127
*
6XDR|1|a|C|2161
6XDR|1|a|G|2162
6XDR|1|a|A|2163
6XDR|1|a|C|2164
6XDR|1|a|C|2165
6XDR|1|a|U|2166
6XDR|1|a|U|2167
6XDR|1|a|G|2168
6XDR|1|a|A|2169
6XDR|1|a|A|2170
6XDR|1|a|A|2171
6XDR|1|a|U|2172
6XDR|1|a|A|2173
6XDR|1|a|C|2174
6XDR|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA