IL_6XGF_048
3D structure
- PDB id
- 6XGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6XGF|1|D|C|1054
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XGF_048 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.08
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XGF|1|D|U|1052
6XGF|1|D|G|1053
6XGF|1|D|C|1054
6XGF|1|D|A|1055
6XGF|1|D|U|1056
*
6XGF|1|D|A|1204
6XGF|1|D|U|1205
6XGF|1|D|G|1206
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 30 nt long spacer
- Chain I
- 30S ribosomal protein S3
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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