3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
CGACC*GCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XGF_057 not in the Motif Atlas
Homologous match to IL_5J7L_056
Geometric discrepancy: 0.1615
The information below is about IL_5J7L_056
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6XGF|1|D|C|1259
6XGF|1|D|G|1260
6XGF|1|D|A|1261
6XGF|1|D|C|1262
6XGF|1|D|C|1263
*
6XGF|1|D|G|1272
6XGF|1|D|C|1273
6XGF|1|D|A|1274
6XGF|1|D|A|1275
6XGF|1|D|G|1276

Current chains

Chain D
16S rRNA

Nearby chains

Chain AB
Transcription termination/antitermination protein NusG
Chain S
30S ribosomal protein S14
Chain W
30S ribosomal protein S19

Coloring options:


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