IL_6XGF_060

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCCG*CGAAC

Length

9 nucleotides

Bulged bases

6XGF|1|D|C|1403

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XGF|1|D|G|1401
6XGF|1|D|C|1403
6XGF|1|D|C|1404
6XGF|1|D|G|1405
*
6XGF|1|D|C|1496
6XGF|1|D|G|1497
6XGF|1|D|A|1499
6XGF|1|D|A|1500
6XGF|1|D|C|1501

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 30 nt long spacer

Chain B

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA