3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
GUAC*GAAGUC
Length
10 nucleotides
Bulged bases
6XGF|1|D|A|1492, 6XGF|1|D|A|1493
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XGF|1|D|G|1405
6XGF|1|D|U|1406
6XGF|1|D|A|1408
6XGF|1|D|C|1409
*
6XGF|1|D|G|1491
6XGF|1|D|A|1492
6XGF|1|D|A|1493
6XGF|1|D|G|1494
6XGF|1|D|U|1495
6XGF|1|D|C|1496

Current chains

Chain D
16S rRNA

Nearby chains

Chain 7
mRNA with 30 nt long spacer
Chain B
Transfer RNA; tRNA
Chain R
30S ribosomal protein S12
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:

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