IL_6XGF_077

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6XGF|1|a|A|504, 6XGF|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XGF_077 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0632

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6XGF|1|a|G|481
6XGF|1|a|A|482
6XGF|1|a|A|483
6XGF|1|a|C|484
*
6XGF|1|a|G|496
6XGF|1|a|A|497
6XGF|1|a|G|498
6XGF|1|a|U|499
6XGF|1|a|G|500
6XGF|1|a|A|501
6XGF|1|a|A|502
6XGF|1|a|A|503
6XGF|1|a|A|504
6XGF|1|a|A|505
6XGF|1|a|G|506
6XGF|1|a|A|507
6XGF|1|a|A|508
6XGF|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24