IL_6XGF_156

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6XGF|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XGF|1|a|U|2122
6XGF|1|a|G|2123
6XGF|1|a|G|2124
6XGF|1|a|G|2125
6XGF|1|a|A|2126
6XGF|1|a|G|2127
*
6XGF|1|a|C|2161
6XGF|1|a|G|2162
6XGF|1|a|A|2163
6XGF|1|a|C|2164
6XGF|1|a|C|2165
6XGF|1|a|U|2166
6XGF|1|a|U|2167
6XGF|1|a|G|2168
6XGF|1|a|A|2169
6XGF|1|a|A|2170
6XGF|1|a|A|2171
6XGF|1|a|U|2172
6XGF|1|a|A|2173
6XGF|1|a|C|2174
6XGF|1|a|C|2175
6XGF|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA