IL_6XGF_191

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6XGF|1|D|A|1257, 6XGF|1|D|A|1280, 6XGF|1|D|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XGF|1|D|G|1255
6XGF|1|D|A|1256
6XGF|1|D|A|1257
6XGF|1|D|G|1258
6XGF|1|D|C|1259
6XGF|1|D|G|1260
6XGF|1|D|A|1261
6XGF|1|D|C|1262
6XGF|1|D|C|1263
*
6XGF|1|D|G|1272
6XGF|1|D|C|1273
6XGF|1|D|A|1274
6XGF|1|D|A|1275
6XGF|1|D|G|1276
6XGF|1|D|C|1277
6XGF|1|D|G|1278
6XGF|1|D|G|1279
6XGF|1|D|A|1280
6XGF|1|D|C|1281
6XGF|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain AB

Transcription termination/antitermination protein NusG

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19