IL_6XHV_068

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6XHV|1|1A|G|1801, 6XHV|1|1A|G|1816, 6XHV|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_068 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0367

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6XHV|1|1A|U|1798
6XHV|1|1A|G|1799
6XHV|1|1A|C|1800
6XHV|1|1A|G|1801
6XHV|1|1A|A|1802
6XHV|1|1A|A|1803
6XHV|1|1A|C|1804
*
6XHV|1|1A|G|1813
6XHV|1|1A|G|1814
6XHV|1|1A|A|1815
6XHV|1|1A|G|1816
6XHV|1|1A|G|1817
6XHV|1|1A|U|1818
6XHV|1|1A|A|1819
6XHV|1|1A|U|1820
6XHV|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA