IL_6XHV_205

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

6XHV|1|2A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_205 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3489

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

6XHV|1|2A|G|880
6XHV|1|2A|G|881
6XHV|1|2A|G|882
*
6XHV|1|2A|C|894
6XHV|1|2A|U|895
6XHV|1|2A|A|896
6XHV|1|2A|C|897

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Z

50S ribosomal protein L25

Chain 2w

Transfer RNA; tRNA