IL_6XHV_320

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6XHV|1|2a|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_320 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.0788

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6XHV|1|2a|G|922
6XHV|1|2a|A|923
*
6XHV|1|2a|U|1393
6XHV|1|2a|A|1394
6XHV|1|2a|C|1395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2e

30S ribosomal protein S5