IL_6XHV_321

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6XHV|1|2a|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_321 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0601

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6XHV|1|2a|G|925
6XHV|1|2a|G|926
6XHV|1|2a|G|927
*
6XHV|1|2a|U|1390
6XHV|1|2a|U|1391

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2v

mRNA