IL_6XHV_349

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACCCG*UGUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_349 not in the Motif Atlas

Geometric match to IL_8VM9_004

Geometric discrepancy: 0.3813

The information below is about IL_8VM9_004

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6XHV|1|1a|A|185
6XHV|1|1a|C|186
6XHV|1|1a|C|187
6XHV|1|1a|C|188
6XHV|1|1a|G|189
*
6XHV|1|1a|U|189|||K
6XHV|1|1a|G|189|||L
6XHV|1|1a|U|190
6XHV|1|1a|G|191
6XHV|1|1a|U|192

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20