3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GAC*GC
Length
5 nucleotides
Bulged bases
6XHW|1|2A|A|1220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XHW_215 not in the Motif Atlas
Homologous match to IL_7RQB_048
Geometric discrepancy: 0.1075
The information below is about IL_7RQB_048
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6XHW|1|2A|G|1219
6XHW|1|2A|A|1220
6XHW|1|2A|C|1221
*
6XHW|1|2A|G|1229
6XHW|1|2A|C|1230

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2U
50S ribosomal protein L20
Chain 2V
50S ribosomal protein L21

Coloring options:


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