IL_6XHW_242

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGGAGG*CCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHW_242 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3389

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XHW|1|2A|G|1856
6XHW|1|2A|G|1857
6XHW|1|2A|G|1858
6XHW|1|2A|A|1859
6XHW|1|2A|G|1860
6XHW|1|2A|G|1861
*
6XHW|1|2A|C|1881
6XHW|1|2A|C|1882
6XHW|1|2A|G|1883
6XHW|1|2A|A|1884
6XHW|1|2A|A|1885
6XHW|1|2A|C|1886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Transfer RNA; tRNA