IL_6XHX_139
3D structure
- PDB id
- 6XHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GUC*GAUAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XHX_139 not in the Motif Atlas
- Geometric match to IL_6CK5_002
- Geometric discrepancy: 0.3159
- The information below is about IL_6CK5_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_36516.3
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
6XHX|1|1a|G|597
6XHX|1|1a|U|598
6XHX|1|1a|C|599
*
6XHX|1|1a|G|639
6XHX|1|1a|A|640
6XHX|1|1a|U|641
6XHX|1|1a|A|642
6XHX|1|1a|C|643
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1h
- 30S ribosomal protein S8
- Chain 1q
- 30S ribosomal protein S17
Coloring options: