IL_6XHX_211

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6XHX|1|2A|U|1142, 6XHX|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_211 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0603

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6XHX|1|2A|C|1018
6XHX|1|2A|U|1019
6XHX|1|2A|A|1020
6XHX|1|2A|A|1021
6XHX|1|2A|G|1022
6XHX|1|2A|U|1023
6XHX|1|2A|G|1024
*
6XHX|1|2A|C|1140
6XHX|1|2A|U|1141
6XHX|1|2A|U|1142
6XHX|1|2A|A|1142|||A
6XHX|1|2A|A|1143
6XHX|1|2A|G|1144

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2N

50S ribosomal protein L13