IL_6XHX_215

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

27 nucleotides

Bulged bases

6XHX|1|2A|U|1083, 6XHX|1|2A|A|1088, 6XHX|1|2A|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHX|1|2A|G|1055
6XHX|1|2A|G|1056
6XHX|1|2A|A|1057
*
6XHX|1|2A|U|1081
6XHX|1|2A|U|1082
6XHX|1|2A|U|1083
6XHX|1|2A|A|1084
6XHX|1|2A|A|1085
6XHX|1|2A|A|1086
6XHX|1|2A|G|1087
6XHX|1|2A|A|1088
6XHX|1|2A|G|1089
6XHX|1|2A|U|1090
6XHX|1|2A|G|1091
6XHX|1|2A|C|1092
6XHX|1|2A|G|1093
6XHX|1|2A|U|1094
6XHX|1|2A|A|1095
6XHX|1|2A|A|1096
6XHX|1|2A|U|1097
6XHX|1|2A|A|1098
6XHX|1|2A|G|1099
6XHX|1|2A|C|1100
6XHX|1|2A|U|1101
6XHX|1|2A|C|1102
6XHX|1|2A|A|1103
6XHX|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6